Identification of immune-responsive circular RNAs in shrimp (Litopenaeus vannamei) upon yellow head virus infection


Published: January 2024 Document Type: Article
Journal: Fish and Shellfish Immunology,  Volume: 144,  Issue: , Pages
Publisher: Academic Press
Abstract:
Circular RNAs (circRNAs) are a subclass of non-coding RNAs (ncRNAs) formed through a process known as back-splicing. They play a crucial role in the genetic regulation of various biological processes. Currently, circRNAs have been identified as participants in the antiviral response within mammalian cells. However, circRNAs in shrimp infected with the yellow head virus (YHV) remain largely unexplored. Therefore, this study aims to identify circRNAs in the hemocytes of Litopenaeus vannamei during YHV infection. We discovered 358 differentially expressed circRNAs (DECs), with 177 of them being up-regulated and 181 down-regulated. Subsequently, eight DECs, including circ_alpha-1-inhibitor 3, circ_CDC42 small effector protein 2, circ_hemicentin 2, circ_integrin alpha V, circ_kazal-type proteinase inhibitor, circ_phenoloxidase 3, circ_related protein rab-8B, and circ_protein toll-like, were randomly selected for analysis of their expression patterns during YHV infection using qRT-PCR. Furthermore, the circRNAs' characteristics were confirmed through PCR, RNase R treatment, and Sanger sequencing, all of which were consistent with the features of circRNAs. These findings contribute to a better understanding of circRNAs' involvement in the antiviral response in shrimp. © 2023 Elsevier Ltd
Keyword: circRNA sequencing; Circular RNAs; Litopenaeus vannamei; Yellow head virus
Scopus Link: https://www.scopus.com/inward/record.uri?eid=2-s2.0-85178094496&doi=10.1016%2fj.fsi.2023.109246&partnerID=40&md5=54488659c72c20bc139d92eaa91896be
DOI: https://doi.org/10.1016/j.fsi.2023.109246